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Sano Centre for Computational Personalized Medicine
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The Human Resources Strategy for Researchers
13 Jun 2023

Job Information

Organisation/Company
Sano Centre for Computational Personalized Medicine
Research Field
Computer science
Researcher Profile
First Stage Researcher (R1)
Application Deadline
Country
Poland
Type of Contract
Temporary
Job Status
Full-time
Hours Per Week
40
Is the job funded through the EU Research Framework Programme?
Not funded by a EU programme
Is the Job related to staff position within a Research Infrastructure?
No

Offer Description

Project title: Advancing BioMedical Literature Search using Federated Search and Generative AI

Publication date: 14.06.2023

Closing date: 16.07.2023

Level of education: Master's degree

Hours: 40 hours per week

Salary indication: up to 9300 PLN gross monthly

Supervisors:

Sano: Dr. Ahmed Abdeen Hamed (Clinical Data Science Research Group Leader)

Project start: ASAP (Summer 2023)

The position is for Sano's Clinical Data Science team. We are seeking a highly motivated and talented individual to join our research team as a PhD student. This position offers an exciting opportunity to contribute to the advancement of biomedical literature federated search through the application of generative AI techniques and cutting-edge tools, such as ChatGPT, LLaMA, Alpaca, and others.

The successful candidate will be involved in developing and enhancing a federated search engine that enables simultaneous searching of multiple biomedical literature databases. This research project aims to leverage the power of generative AI models and natural language processing to improve the effectiveness and efficiency of information retrieval from diverse biomedical sources. The candidate will explore the use of state-of-the-art tools, including ChatGPT, LLaMA, Alpaca, and other relevant AI models, to enhance the search capabilities, semantic understanding, and user interaction within the federated search framework.

The position is especially adequate for PhD students who want to learn about, apply and further develop workflow technologies for scalable data integration in the exciting field of clinical data science and analytics. You will contribute to the ambition of Sano's Clinical Data Science team to be nationally and internationally recognized for its strengths in clinical data science in general and biomedical data analytics, in particular.

Requirements

Research Field
Computer science
Education Level
Master Degree or equivalent
Skills/Qualifications

Required background and skills of the candidate:

  • Master's degree (completed or near completion) in a relevant discipline, such as data; science, mathematics, biostatistics, computational biology, computational chemistry;
  • Proficiency in Python, C++, Java, and/or Julia programming;
  • Familiarity with generative AI models and frameworks, such as ChatGPT, LLaMA, Alpaca, or similar tools.
  • Solid understanding of biomedical literature databases, ontologies, and related resources.
  • Excellent problem-solving abilities and the ability to work both independently and collaboratively in a research team.
  • Strong written and verbal communication skills, with the ability to present research findings effectively.
Languages
ENGLISH
Level
Excellent

Additional Information

Benefits

We offer a fixed term contract for 40 hours per week for the duration of 4 years. This will be supported by an educational plan that includes attendance of courses and (international) meetings. The contract will include opportunities to participate in teaching and supervision of undergraduate and master students.

The salary, depending on relevant experience before the beginning of the employment contract, will be up to 9300 PLN gross per month, based on a full-time contract (40 hours a week) for the duration of 4 years with private medical care and a sports card.

This PhD will be a collaboration between Sano and a degree awarding body. The student will be based in Poland, operating in conjunction with the Cyfronet supercomputing centre hosted by AGH.

Sano offers excellent opportunities for study and development, access to many international conferences on computational medicine and the possibility to grow in a scientific society.

Selection process

Sano is an equal-opportunity employer. We prioritize diversity and are committed to creating an inclusive environment for everyone. We value a spirit of enquiry and perseverance, provide the space to keep asking questions, and promote a culture of curiosity and creativity.

Do you recognize yourself in the job profile? Then we look forward to receiving your application.

Applications in .pdf should include:

  • a cover letter.
  • a curriculum vitae.
Additional comments

You are expected to do:

  • Conduct an in-depth review of the existing literature on federated search in the biomedical domain, as well as generative AI models and techniques.
  • Design and implement novel algorithms and methodologies to improve the performance and accuracy of the federated search engine.
  • Utilize generative AI tools, such as ChatGPT, LLaMA, Alpaca, etc., to enhance the natural language understanding and generation capabilities of the search system.
  • Collaborate with interdisciplinary teams, including researchers and clinicians, to understand their needs and incorporate their feedback into the system design.
  • Perform rigorous evaluations and experiments to assess the effectiveness and efficiency of the developed federated search framework.
  • Publish research findings in top-tier conferences and journals, contributing to the academic and scientific community.
  • Contribute to the intellectual environment of the research group through active participation in discussions, seminars, and knowledge sharing.

Work Location(s)

Number of offers available
1
Company/Institute
Sano Science
Country
Poland
Geofield

Contact

State/Province
Malopolska
City
Kraków
Website
Street
Czarnowiejska 36
Postal Code
30054
E-Mail
m.golabek@sano.science

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